PIE Lab Manual
0.1
Updating the manual
1
Welcome
2
What we do and why we do it
2.1
Philosophy of scientific principles
2.2
Chronological and academic history
2.3
Things we’ve been reading
2.3.1
Papers by the PIE lab
2.3.2
Papers etc. by others
3
Roles and expectations
3.1
People
3.1.1
Principal Investigators
3.1.2
Graduate students
3.1.3
Undergraduate Research Assistants
3.1.4
Alumni
3.2
Mentorship philosophy
3.2.1
Primary mentors
3.2.2
Recommendation Letters
3.2.3
Individual Development Plans (IDPs)
3.3
Expectations
3.3.1
Principal Investigators
3.3.2
Graduate Students
3.3.3
Undergraduate students
4
Communication
4.1
Slack
4.2
Email
4.3
Response time
4.4
Phone
5
Logistics
5.1
Lab contact information
5.2
Psych IT
5.3
Getting locked out
5.4
Being in the lab
5.5
Holidays and vacations
6
Day-to-day Information
6.1
Lab use
6.2
Pet Policy
6.3
Sickness policy
6.4
Respect space
6.5
Be professional
7
Code of Conduct
7.1
Scientific integrity
7.2
Code of Conduct
7.2.1
Sexual Harassment and Assault
7.3
Managing Conflict
8
SAPA project website
8.1
Introduction
8.1.1
Infrastructure
8.1.2
How to connect to database
8.1.3
Connecting from R
9
Recurring events
9.1
Lab Meetings
9.2
Departmental talks
9.3
Regular Check-Ins
9.4
PI PIE
10
Internal Resources (PIE LAB)
10.1
Talapas
10.2
Server
10.2.1
Accessing the drive on a Mac
10.2.2
Accessing the drive on a PC
10.3
Website
10.3.1
Details
10.3.2
Purpose
10.3.3
Current sections
10.3.4
How to update
10.4
Manual
10.4.1
Clone lab manual to your computer
10.4.2
Updating the manual [using the RStudio GUI]
10.4.3
Updating the manual [using the terminal in Rstudio]
10.4.4
Requesting updates
10.5
GitHub
10.6
Research Assistants
10.6.1
Joining the PIE lab
10.7
Lab logo
11
External Resources
11.1
Psychology Department
11.1.1
Graduate Training
11.1.2
Resources
11.2
Support at the University of Oregon
11.2.1
Technology
11.2.2
Financial support
11.2.3
Professional Societies
12
Tutorials and Links
12.1
R and RMarkdown
12.1.1
Beginners
12.1.2
Cheatsheets
12.1.3
Data Visualization
12.1.4
Markdown
12.1.5
Using Zotero with RMarkdown
12.1.6
GitHub
12.1.7
Downloading direct from source
12.1.8
Text Analysis
12.1.9
Iteration
12.1.10
Writing functions
12.1.11
Making tables
12.1.12
Reproducibility
12.1.13
US Census API
12.2
Writing
12.2.1
Grammar and syntax
12.2.2
Finding articles
12.2.3
Bibliography
12.2.4
Reviewing the literature
12.2.5
Responding to reviews
12.3
Survey Building
12.3.1
Qualtrics
12.4
Presentations
12.5
Authorship
12.6
Statistics
12.6.1
Probability
12.6.2
Generalized Linear Model
12.6.3
Machine learning+
12.6.4
Text analysis
12.6.5
Statistical Power
12.6.6
Structural Equation Modeling
12.6.7
Mediation and Moderation
12.6.8
Longitudinal data analysis
12.6.9
Item response theory
12.7
Graduate School
12.8
Life
13
Onboarding
13.1
Everyone
13.2
Graduate Students
13.3
Undergraduate (RA and Honors Students)
14
Data
14.1
SAPA project website
14.1.1
Introduction
14.2
Ethics
14.3
SAPA Data
14.4
Collecting data
14.4.1
Amazon Mechanical Turk
14.4.2
Prolific
14.5
Storing and Managing
14.6
Codebooks
14.7
Analyzing
15
Publications
15.1
Authorship
15.2
Pre-publication checklist
15.3
Preprints and open access
15.4
Where we submit
16
Conferences
16.1
Conferences we typically attend
16.2
How/why to give a talk
16.3
Travel expenses
16.3.1
Conference fees
16.3.2
Flights
16.3.3
Hotels
16.3.4
Other expenses
16.4
Poster printing
17
Offboarding
17.1
Checklist
17.2
Unfinished projects and intellectual property
17.3
Staying in touch
Published with bookdown
PIE Lab Manual
PIE Lab Manual
DRAFT
2022-09-28
0.1
Updating the manual
To request additions or edits to the lab manual, please submit a new
issue
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